PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA01g19870
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family C2H2
Protein Properties Length: 307aa    MW: 34714.1 Da    PI: 8.1775
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA01g19870genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.81.9e-05146165120
                 EEETTTTEEESSHHHHHHHH CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                 ++C+ C k+F+r  nL+ H+
  CA01g19870 146 FSCHLCYKTFNRYNNLQMHM 165
                 89*****************9 PP

2zf-C2H215.93.8e-05230252123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 + C +Cgk+F  k + ++H +++
  CA01g19870 230 FMCRKCGKPFAVKGDWRTHEKNC 252
                 89*****************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.31E-5139168No hitNo description
PROSITE profilePS5015710.18146173IPR007087Zinc finger, C2H2
PROSITE patternPS000280148168IPR007087Zinc finger, C2H2
SuperFamilySSF576677.17E-6216250No hitNo description
Gene3DG3DSA:3.30.160.604.3E-5216250IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MTEPYYNFFT GGWFNFLPLH QQYISSSNFC YNKEIAPPPP PPPSPPLREA LPLLNSNNYY  60
SCESSTTTFS HEENNNNNSN CNINENVSVS LHIGLPSSCE GVVDSGGGNK EDQFDVVMSN  120
NTTSSLIKGQ YWIPTPSQIL IGPTQFSCHL CYKTFNRYNN LQMHMWGHGS QYRKGPESLR  180
GTQPSAMLRL PCYCCAHGCK HNIDHPRARP LKDFRTLQTH YKRKHGAKPF MCRKCGKPFA  240
VKGDWRTHEK NCGKIWYCIC GSDFKHKRSL KDHIKSFGRG HGAVGVPNLE DLEEDSTSEI  300
EQDLIL*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755131e-165HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016556772.10.0PREDICTED: zinc finger protein WIP2-like
SwissprotQ9SVY11e-113ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLK4AY980.0K4AY98_SOLLC; Uncharacterized protein
STRINGSolyc01g087050.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA46224133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-114C2H2 family protein